Type of Publication: Article in Journal

An expert study on hierarchy comparison methods applied to biological taxonomies curation

Author(s):

Sancho-Chavarría, Lilliana; Beck, Fabian; Mata-Montero, Erick

Title of Journal:

PeerJ Computer Science

Publication Date:

2020

Number of Issue:

6:e277

Digital Object Identifier (DOI):

doi:10.7717/peerj-cs.277

Citation:

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Abstract

Comparison of hierarchies aims at identifying differences and similarities between two or more hierarchical structures. In the biological taxonomy domain, comparison is indispensable for the reconciliation of alternative versions of a taxonomic classification. Biological taxonomies are knowledge structures that may include large amounts of nodes (taxa), which are typically maintained manually. We present the results of a user study with taxonomy experts that evaluates four well-known methods for the comparison of two hierarchies, namely, edge drawing, matrix representation, animation and agglomeration. Each of these methods is evaluated with respect to seven typical biological taxonomy curation tasks. To this end, we designed an interactive software environment through which expert taxonomists performed exercises representative of the considered tasks. We evaluated participants’ effectiveness and level of satisfaction from both quantitative and qualitative perspectives. Overall quantitative results evidence that participants were less effective with agglomeration whereas they were more satisfied with edge drawing. Qualitative findings reveal a greater preference among participants for the edge drawing method. In addition, from the qualitative analysis, we obtained insights that contribute to explain the differences between the methods and provide directions for future research.